Comparison of pan-genome approaches (student project)

What are the functionalities, limitations, strengths and weaknesses of various pan-genome representations?
The aim was to characterize the differences between various pan-genome approaches.

  • Select 3-5 benchmark data sets (public data)
  • Apply the three pan-genome packages to each data set, explore the functionalities
  • Report similarities and difference concerning the data structure, functionality, resource consumption, limitations of each approach. Successfully constructed pan-genomes (on public data) and final report were shared with VLPB members.

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